Multichannel-systems NeuroExplorer manuals

Multichannel systems NeuroExplorer User Manual (373 pages)

Brand: Multichannel-systems | Category: Software | Size: 3.20 MB |

English

Table of contents

NeuroExplorer Manual

1

Table of Contents

3

1. Getting Started

9

NeuroExplorer Updates

10

Files Panel

14

Multi Channel Systems Files

20

Neuralynx Files

20

File Import Options

20

1.10. 1D Data Viewer

26

1.11. Analyzing Data

27

1.16. Analysis Templates

33

1.17. Numerical Results

34

1.18. Post-processing

35

1.20. Working with Matlab

37

1.21. Working with Excel

38

1.22. Saving Graphics

39

2. Analysis Reference

40

2.1. Data Types

41

2.1.2. Events

42

2.1.3. Intervals

42

2.1.4. Markers

44

2.1.5. Population Vectors

45

2.1.6. Waveforms

46

Limitations

47

2.2. Data Selection Options

48

2.3. Post-Processing Options

49

2.4. Matlab Options

50

2.5. Excel Options

50

2.7. Cumulative Sum Graphs

52

2.8. Rate Histograms

53

2.10. Autocorrelograms

58

2.11. Perievent Histograms

61

Peak and Trough Statistics

64

2.12. Crosscorrelograms

66

Shift-Predictor Algorithm

71

More on Time Intervals

72

2.14. Rasters

73

2.15. Perievent Rasters

74

2.16. Joint PSTH

77

2.18. Instant Frequency

80

(t[i], t[i] - t[i-1])

81

2.21. Synchrony vs. Time

83

2.22. Trial Bin Counts

85

2.24. Burst Analysis

90

2.26. PSTH Versus Time

95

2.28. Regularity Analysis

99

Algorithm

100

Reference

100

2.29. Place Cell Analysis

101

Summary of Numerical Results

102

2.30. Reverse Correlation

105

2.31. Epoch Counts

108

2.32. Coherence Analysis

110

2.33. Spectrogram Analysis

113

2.34. Perievent Spectrograms

115

2.35. Joint ISI Distribution

117

Parameters

119

3. Working with Graphics

121

3.4. Text Labels

124

3.5. Lines

125

3.6. Rectangles

126

4. Working with 3D Graphics

127

4.2. 3D Graphics Parameters

129

5. Programming with NexScript

133

5.1. Script Variables

135

5.2. File Variables

136

5.3. Expressions

138

5.4. Flow Control

139

Conditional operators

140

5.5. Functions

141

See Also

142

5.5.1.2. GetFileName Function

144

5.5.1.3. OpenFile Function

145

5.5.1.4. CloseFile Function

146

5.5.1.5. ReadLine Function

147

5.5.1.6. WriteLine Function

148

5.5.1.8. NewDocument Function

150

CloseDocument(doc)

151

5.5.1.15. MergeFiles Function

157

5.5.1.16. ReadBinary Function

158

5.5.1.17. FileSeek Function

159

5.5.1.18. SelectFile Function

160

5.5.2.1. GetDocPath Function

162

5.5.2.2. GetDocTitle Function

163

SetDocEndTime(doc, 1200.3)

166

5.5.3.1. GetVarCount Function

169

5.5.3.2. GetVarName Function

170

5.5.3.4. GetVar Function

172

5.5.3.5. DeleteVar Function

173

5.5.3.6. Delete Function

174

5.5.3.8. NewEvent Function

176

5.5.3.9. NewIntEvent Function

177

5.5.3.12. NewContVar Function

180

5.5.4.1. IsSelected Function

183

5.5.4.2. Select Function

184

5.5.4.3. Deselect Function

185

5.5.4.4. SelectVar Function

186

5.5.4.5. DeselectVar Function

187

5.5.4.6. Select Function

188

5.5.4.7. Deselect Function

189

5.5.4.8. SelectAll Function

190

5.5.4.9. DeselectAll Function

191

SelectAllNeurons(doc)

192

EnableRecalcOnSelChange ()

194

5.5.5.1. GetName Function

197

AddTimestamp(eventVar, 1.5)

199

5.5.5.6. AddInterval Function

202

5.5.6. Analysis Functions

203

PrintGraphics(doc)

206

5.5.7.1. GetNumRes Function

217

5.5.8.1. Rename Function

231

5.5.8.2. Join Function

232

5.5.8.3. Sync Function

233

5.5.8.4. NotSync Function

234

5.5.8.5. FirstAfter Function

235

5.5.8.6. FirstNAfter Function

236

5.5.8.7. LastBefore Function

237

"Trials"))

238

5.5.8.11. SelectEven Function

241

5.5.8.12. SelectOdd Function

242

5.5.8.13. ISIFilter Function

243

5.5.8.22. IntOr Function

252

5.5.8.23. IntAnd Function

253

5.5.8.24. IntSize Function

254

5.5.8.25. IntFind Function

255

5.5.8.27. Shift Function

257

5.5.8.28. NthAfter Function

258

5.5.9. Matlab Functions

263

SendSelectedVarsToMatlab(doc)

264

5.5.10. Excel Functions

270

CloseExcelFile(excelFilePath)

272

5.5.12.1. RunScript Function

277

5.5.12.2. Sleep Function

278

5.5.13. Math Functions

279

5.5.13.1. seed Function

281

5.5.13.2. expo Function

282

5.5.13.3. floor Function

283

5.5.13.4. ceil Function

284

5.5.13.5. round Function

285

5.5.13.6. abs Function

286

5.5.13.7. sqrt Function

287

5.5.13.8. pow Function

288

5.5.13.9. exp Function

289

5.5.13.10. min Function

290

5.5.13.11. max Function

291

5.5.13.12. log Function

292

5.5.13.13. sin Function

293

5.5.13.14. cos Function

294

5.5.13.15. tan Function

295

5.5.13.16. acos Function

296

5.5.13.17. asin Function

297

5.5.13.18. atan Function

298

5.5.13.19. RoundToTS Function

299

% x now equals to 1

303

5.5.13.25. GetBit Function

305

5.5.14. String Functions

306

5.5.14.1. Left Function

307

5.5.14.2. Mid Function

308

5.5.14.3. Right Function

309

5.5.14.4. Find Function

310

5.5.14.5. StrLength Function

311

5.5.14.6. NumToStr Function

312

5.5.14.7. StrToNum Function

313

% numFields is now equal to 4

314

5.5.14.10. CharToNum Function

316

5.5.14.11. NumToChar Function

317

5.5.15. Debug Functions

318

5.5.15.1. Trace Function

319

5.5.15.2. MsgBox Function

320

6. COM/ActiveX Interfaces

321

6.1. Application

322

6.1.2. DocumentCount Property

324

6.1.3. Version Property

325

6.1.4. Visible Property

326

6.1.5. OpenDocument Method

327

6.1.6. Document Medhod

328

6.1.7. Sleep Method

329

6.1.8. RunNexScript Method

330

6.2. Document

332

6.2.1. Path Property

334

6.2.2. FileName Property

335

6.2.3. Comment Property

336

6.2.5. StartTime Property

338

6.2.6. EndTime Property

339

6.2.7. VariableCount Property

340

6.2.8. NeuronCount Property

341

6.2.9. EventCount Property

342

6.2.11. MarkerCount Property

344

6.2.12. WaveCount Property

345

6.2.14. Variable Method

347

6.2.15. Neuron Method

348

6.2.16. Event Method

349

6.2.17. Interval Method

350

6.2.18. Marker Method

351

6.2.19. Wave Method

352

6.2.20. Continuous Method

353

6.2.21. DeselectAll Method

354

6.2.24. ApplyTemplate Method

357

6.2.26. Close Method

359

6.3. Variable

360

6.3.1. Name Property

361

6.3.3. Timestamps Method

363

6.3.4. IntervalStarts Method

364

6.3.5. IntervalEnds Method

365

6.3.7. FragmentCounts Method

367

6.3.9. MarkerValues Method

369

6.3.10. WaveformValues Method

370

6.3.11. Select Method

371

6.3.12. Deselect Method

372

Page 371

373

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